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Welcome to the CryoNAV Wiki!
CryoNAV is a comprehensive software solution designed to streamline and manage the entire cryo-electron microscopy (cryo-EM) data lifecycle. This wiki serves as a guide for new and existing CryoNAV users, helping you navigate its features and effectively manage your cryo-EM projects from sample preparation to final archiving.
Whether you are setting up your first experiment, processing complex datasets, or managing long-term storage, CryoNAV provides the tools you need to enhance productivity and ensure data integrity.
Key Features of CryoNAV
CryoNAV offers a robust suite of tools to support your cryo-EM research:
- Sample & Experiment Management: Define and track sample preparation conditions and experimental parameters.
- Tilt Series Data Collection & Import: Interface with microscopes, manage data collection, and import data from various sources.
- Comprehensive Metadata Management: Automate metadata extraction, manually edit and annotate, and utilize advanced search and filtering. Includes management of search maps and thumbnails for grids and tilt series.
- Data Visualization: View grid atlases, search maps, thumbnails, and inspect raw/processed data.
- Secure Data Storage & Backup: Configure storage locations and implement best practices for data backup.
- Integrated Data Processing: Manage processing pipelines and integrate with popular cryo-EM tools such as:
- Data Sharing, Uploading & Archiving: Export data, prepare datasets for online repositories (e.g., EMPIAR, EMDB), and manage long-term storage (LTS).
Getting Started
New to CryoNAV? Here are some quick links to get you started:
Use the navigation menu (usually on the left or top of the page) to explore different sections of this wiki. Key areas include:
- Core Concepts & Workflow
- CryoNAV Modules & Features (Detailed guides on specific functionalities)
- FAQ & Troubleshooting
- Community & Support
We hope this wiki helps you make the most of CryoNAV!