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CryoNAV Download

From CryoNAVwiki

Download

CryoNAV is currently under development and not yet available for public download. However, the software is designed to integrate with various established cryo-EM tools. Below are the download links for the cryo-EM software packages that CryoNAV is planned to work with:

Core Cryo-EM Processing Tools

IMOD

Image processing and 3D reconstruction package for electron tomography.

Dynamo

Subtomogram averaging and cryo-ET processing software.

  • Download: https://www.dynamo-em.org/
  • Description: Flexible development tool for cryo-ET data processing with high-performance computing support

CTFfind

Contrast transfer function estimation for electron micrographs.

RELION

REgularised LIkelihood OptimisatioN for cryo-EM structure determination.

EMAN2

Scientific image processing suite with focus on cryo-EM and cryo-ET.

AI and Deep Learning Tools

cryoCARE

Content-aware image restoration for cryo-electron tomography.

DeepDeWedge

Deep learning for denoising and missing wedge reconstruction.

Installation Notes

Prerequisites: Most cryo-EM software packages require:

  • Linux or macOS operating systems
  • CUDA-compatible GPUs for accelerated processing (recommended)
  • MPI libraries for parallel processing
  • Python environments (Anaconda/Miniconda recommended)

CryoNAV also provides integration with SLURM for cluster computing and Amazon S3 for cloud-based data storage and retrieval.

Important: Always check the specific system requirements and installation instructions for each software package before downloading. Many tools have dependencies on specific versions of libraries, compilers, or GPU drivers.

Academic Use: Most of these tools are freely available for academic research. Commercial users should check licensing requirements for each package.

Support and Documentation

For CryoNAV-specific questions about planned integrations with these tools, please contact Paula Navarro (paula.navarro{at}unil.ch).

For issues with individual software packages, please refer to their respective documentation, forums, or support channels linked on their download pages.

See Also